genome search | EU-SAGE

Genome-editing techniques are promising tools in plant breeding. To facilitate a more comprehensive understanding of the use of genome editing, EU-SAGE developed an interactive, publicly accessible online database of genome-edited crop plants as described in peer-reviewed scientific publications.
The aim of the database is to inform interested stakeholder communities in a transparent manner about the latest evidence about the use of genome editing in crop plants. Different elements including the plant species, traits, techniques, and applications can be filtered in this database.
Regarding the methodology, a literature search in the bibliographic databases and web pages of governmental agencies was conducted using predefined queries in English. Identifying research articles in other languages was not possible due to language barriers. Patents were not screened.
Peer-reviewed articles were screened for relevance and were included in the database based on pre-defined criteria. The main criterium is that the research article should describe a research study of any crop plant in which a trait has been introduced that is relevant from an agricultural and/or food/feed perspective. The database does neither give information on the stage of development of the crop plant, nor on the existence of the intention to develop the described crop plants to be marketed.
This database will be regularly updated. Please contact us via the following webpage in case you would like to inform us about a new scientific study of crops developed for market-oriented agricultural production as a result of genome editing

Displaying 60 results

Traits related to biotic stress tolerance

Bacterial resistance: Enhanced resistance to Xanthomonas campestris pv. musacearum, causing Bananas Xanthomonas wilt (BXW). Overall economic losses caused by Xanthomonas campestris were estimated at 2-8 billion USD over a decade.
(Tripathi et al., 2021)

SDN1
CRISPR/Cas

International Institute of Tropical Agriculture (IITA), Kenya

Bacterial resistance: improved resistance to Xanthomonas oryzae, which causes bacterial blight, a devastating rice disease resulting in yield losses.
(Oliva et al., 2019)

SDN1
CRISPR/Cas

International Rice Research Institute, Philippines
University of Missouri
University of Florida
Iowa State University
Donald Danforth Plant Science Center, USA
Université Montpellier, France
Heinrich Heine Universität Düsseldorf
Max Planck Institute for Plant Breeding Research
Erfurt University of Applied Sciences, Germany
Nagoya University, Japan

Fungal resistance: resistance to Fusarium graminearum. Fusarium head blight (FHB) is an economically important disease, affecting both yield and grain quality of maize, wheat and barley.
(Brauer et al., 2020)

SDN1
CRISPR/Cas

Ottawa Research and Development Centre, Canada

Fungal resistance: increased resistance to Phytophthora infestans, causing late blight disease, the most serious disease of potato crops worldwide. The pathogen can infect the leaves, stems and tubers of potato plants. An unprotected field can be completely destroyed in several days.
(Kieu et al., 2021)

SDN1
CRISPR/Cas

Swedish University of Agricultural Sciences, Sweden
University of Copenhagen, Denmark

Nematode resistance: decreased susceptibility against root-knot nematodes, showing fewer gall and egg masses.
(Noureddine et al., 2023)

SDN1
CRISPR/Cas

Université Côte d’Azur
Université de Toulouse, France
Kumamoto University, Japan

Resistance to parasitic weed: Striga spp. The parasitic plant reduces yields of cereal crops worldwide.
(Hao et al., 2023)

SDN1
CRISPR/Cas

University of Nebraska-Lincoln
Pennsylvania State University, USA
International Maize and Wheat Improvement Center (CIMMYT), Senegal
Kenyatta University, Kenya

Rapid detection system for Paracoccus marginatus, an insect that can cause huge crop losses.
( Chen et al., 2024 )

SDN1
CRISPR/Cas

Fujian Academy of Agricultural Sciences, China
UMR ISA, France

Viral resistance: partial resistance to Pepper veinal mottle virus (PVMV) isolate IC, with plants harboring weak symptoms and low virus loads at the systemic level.
(Moury et al., 2020)

SDN1
CRISPR/Cas

INRA, France
Université de Tunis El-Manar
Université de Carthage, Tunisia
Université Felix Houphouët-Boigny, Cote d’Ivoire
Institut de l’Environnement et de Recherches Agricoles, Burkina Faso

Fungal resistance: Enhanced resistance to powdery mildew, a fungal disease causing great losses in soybean yield and seed quality.
(Bui et al., 2023)

SDN1
CRISPR/Cas

Institute of Biotechnology
University of Science and Technology of Hanoi
Vietnam Academy of Science and Technology
Vietnam Academy of Agriculture Science, Vietnam
Washington University in St. Louis
University of Missouri, USA

Fungal resistance: improved resistance to necrotrophic fungus Botrytis cinerea.
(Jeon et al., 2020)

SDN1
CRISPR/Cas

Stanford University, UK
L’Oreal, France
Howard Hughes Medical Institute, USA

Fungal resistance: Decreased susceptibility to Plasmopara viticola, the causing agent of the grapevine downy mildew.
(Djennane et al., 2023)

SDN1
CRISPR/Cas

Université de Strasbourg
Institut Jean-Pierre Bourgin (IJPB), France

Viral resistance: resistance to pepper veinal mottle virusin cherry fruit tomato (Solanum lycopersicum var. cerasiforme)
(Kuroiwa et al., 2021)

SDN1
CRISPR/Cas

INRAE
Université Paris-Saclay
Université de Toulouse, France

Resistance against a protist pathogen: stable resistance against clubroot disease. Clubroot disease is caused by the protist Plasmodiophora brassicae Woronin and can result in a 10-15% yield loss in Brassica species as well as related crops.
(Hu et al., 2023)

SDN1
CRISPR/Cas

Saskatoon Research and Development Centre, Canada

Bacterial resistance: Strong resistance to Xanthomonas oryzae, causing bacterial blight, a devastating rice disease resulting in yield losses.
(Blanvillain-Baufumé et al., 2017)

SDN1
TALENs

IRD-CIRAD-Université, France

Viral resistance: enhanced Potato virus Y (PVY) resistance. PVY infection can result in up to 70% yield loss globally.
(Le et al., 2022)

SDN1
CRISPR/Cas

Vietnam Academy of Science and Technology, Vietnam
University of Edinburgh, UK

Fungal resistance: stripe rust resistance, caused by Puccinia striiformis f. sp. tritici. In appropriate environmental conditions and susceptible varieties, stripe rust can cause huge grain yield and quality loss.
(Li et al., 2023)

SDN1
CRISPR/Cas

Fudan University
Chinese Academy of Sciences
University of the Chinese Academy of Sciences
China Agricultural University
Guangzhou University
School of Life Science
Shandong Academy of Agricultural Sciences
Ministry of Agriculture
National Engineering Research Center for Wheat and Maize
Sichuan Agricultural University
Nanjing Agricultural University, China
Université Paris Cité
Université Paris-Saclay, France

Bacterial resistance: resistance against banana Xanthomonas wilt (BXW) disease, caused by Xanthomonas campestris pv. musacearum. BXW forms a great threat to banana cultivation in East and Central Africa.
(Ntui et al., 2023)

SDN1
CRISPR/Cas

International Institute of Tropical Agriculture, Kenya

Viral resistance: increased control on viral pathogen Banana streak virus (BSV). The BSV integrates in the banana host genome as endogenous BSV (eBSV). When banana plants are stressed, the eBSV produces infectious viral particles and thus the plant develops disease symptoms.
(Tripathi et al., 2019)

SDN1
CRISPR/Cas

International Institute of Tropical Agriculture (IITA), Kenya
University of California, USA

Fungal resistance: increased resistance against the fungus Pyricularia oryzae, causing rice blast, one of the most destructive diseases affecting rice worldwide.
(Távora et al., 2022)

SDN1
CRISPR/Cas

Federal University of Juiz de Fora
Embrapa Genetic Resources and Biotechnology
Catholic University of Brasilia
Catholic University of Dom Bosco, Brazil
Agricultural Research Center for International Development (CIRAD)
University of Montpellier
Montpellier SupAgro, France

Broad-spectrum disease resistance without yield loss.
( Sha et al., 2023 )

SDN1
CRISPR/Cas

Huazhong Agricultural University
Chengdu Normal University
Jiangxi Academy of Agricultural Sciences
Anhui Agricultural University
BGI-Shenzhen
Northwest A&
F University
Shandong Academy of Agricultural Sciences, China
Université de Bordeaux, France
University of California
The Joint BioEnergy Institute, USA
University of Adelaide, Australia

Traits related to abiotic stress tolerance

Enhanced salt tolerance.
( Ly et al., 2024 )

SDN1
CRISPR/Cas

Vietnam Academy of Science and Technology
Agricultural Genetics Institute, Vietnam

Higher tolerance to salt and osmotic stress through reduced stomatal conductance coupled with increased leaf relative water content and Abscisic acid (ABA) content under normal and stressful conditions.
( Bouzroud et al., 2020 )

SDN1
CRISPR/Cas

Université Mohammed V de Rabat, Morocco
Université de Toulouse, France
Universidade Federal de Viçosa, Brazil

Tolerance to salt stress.
( Tran et al., 2021 )

SDN1
CRISPR/Cas

Gyeongsang National University, South Korea
College of Agriculture
Bac Lieu University, Vietnam

Drought tolerance.
( Njuguna et al., 2018 )

SDN1
CRISPR/Cas

Ghent University
Center for Plant Systems Biology, Belgium
Jomo Kenyatta University of Agriculture and Technology, Kenya

Reduced cuticle permeability and enhanced drought tolerance.
( He et al., 2022 )

SDN1
CRISPR/Cas

Northwest A&
F University
USA
University of British Columbia, Canada

Traits related to improved food/feed quality

Reduced raffinose family oligosaccharide (RFO) levels in seeds. Human and other monogastric animals cannot digest major soluble carbohydrates, RFOs.
( Le et al., 2020 )

SDN1
CRISPR/Cas

Vietnam Academy of Science and Technology, Vietnam
University of Missouri, USA
Leibniz Institute of Plant Genetics and Crop Plant Research
Germany

High oleic, low linoleic and alpha-linolenic acid phenotype. High concentration of linoleic and alpha-linolenic acids causes oxidative instability.
( Do et al., 2019 )

SDN1
CRISPR/Cas

University of Missouri, USA
Vietnam Academy of Science and Technology, Vietnam

Reduced cesium content. The production of radiocesium in food in contaminated soils is a serious health concern.
( Nieves-Cordones et al., 2017 )

SDN1
CRISPR/Cas

Université Montpellier, France

Increased sugar and amino acid content leading to improved fruit quality.
( Nguyen et al., 2023 )

SDN1
CRISPR/Cas

Vietnam Academy of Science and Technology
Food Industries Research Institute, Vietnam
University of Missouri, USA

Altered protein composition due to mutations in seed storage proteins. Two major families of storage proteins, account for about 70% of total soy seed protein. Some major biochemical components influencing the quality of soy food products, for example tofu, are both the quantity and quality of storage proteins in soybean seeds.
( Li et al., 2019 )

SDN1
CRISPR/Cas

Agriculture and Agri-Food Canada
Western University
Harrow Research and Development Centre, Canada
Sun Yat-sen University
Guangdong Academy of Agricultural Sciences
Minnan Normal University
China

Reduce allergen proteins. Structural and metabolic proteins, like α-amylase/trypsin inhibitors are involved in the onset of wheat allergies (bakers' asthma) and probably Non-Coeliac Wheat Sensitivity (NCWS).
( Camerlengo et al., 2020 )

SDN1
CRISPR/Cas

University of Tuscia, Italy
Rothamsted Research, UK
Impasse Thérèse Bertrand-Fontaine, France

Increased levels of oleic acid, decreased levels of fatty acids.
( Morineau et al., 2016 )

SDN1
CRISPR/Cas

Université Paris-Saclay, France

Improved seed oil content: increased levels of monounsaturated fatty acids and decreased levels of polyunsaturated fatty acids.
(Wang et al., 2022)

SDN1
CRISPR/Cas

Huazhong Agricultural University, China
National Research Council Canada, Canada

Traits related to increased plant yield and growth

Early flowering. Certain mutants also showed following phenotypes: determinate flowering, shorter stature and/or basal branching.
(Bellec et al., 2022)

SDN1
CRISPR/Cas

Université Paris-Saclay, France

Control meristem size to increase fruit yield.
( Yuste-Lisbona et al., 2020 )

SDN1
CRISPR/Cas

Universidad de Almería
Universitat Politècnica de València–Consejo Superior de Investigaciones Científicas
Spain
Max Planck Institute for Plant Breeding Research
Thünen Institute of Forest Genetics, Germany
Université Paris-Saclay, France

Increased water use efficiency without growth reductions in well-watered conditions.
( Blankenagel et al., 2022 )

SDN1
CRISPR/Cas

Technical University of Munich
Max Planck Institute of Molecular Plant Physiology
German Research Center for Environmental Health
KWS SAAT SE &
Co.KGaA
Université Technique de Munich
Heinrich Heine University, Germany
LEPSE - Écophysiologie des Plantes sous Stress environnementaux, France

Early flowering. Day-light sensitivity limited the geographical range of cultivation.
( Soyk et al., 2016 )

SDN1
CRISPR/Cas

Cold Spring Harbor Laboratory, USA
Max Planck Institute for Plant Breeding Research, Germany
Université Paris-Scalay, France

Increased pollen activity, subsequently inducing fruit setting.
( Wu et al., 2022 )

SDN1
CRISPR/Cas

South China Agricultural University
Chongqing University, China
Université de Toulouse, France

Confer shoot architectural changes for increased resource inputs to increase crop yield.
( Stanic et al., 2021 )

SDN1
CRISPR/Cas

University of Calgary, Canada
SRM Institute of Technology, India

Production of enlarged, dome-shaped leaves. Enlarged fruits with increased pericarp thickness due to cell expansion.
( Swinnen et al., 2022 )

SDN1
CRISPR/Cas

Ghent University
Center for Plant Systems Biology, Vives, Belgium
Université de Bordeaux, France

Larger fruits with more locules and larger shoot apical meristem.
( Song et al., 2022 )

SDN1
CRISPR/Cas

South China Agricultural University, China
University of Toulouse, France

Early-flowering varieties. The timing of flowering is an important event in the life cycle of flowering plants.
( Jiang et al., 2018 )

SDN1
CRISPR/Cas

Hunan Agricultural University, China
Université de Strasbourg, France

More flowers in both determinate and indeterminate cultivars and more produced fruit.
( Hu et al., 2022 )

SDN1
CRISPR/Cas

Université de Toulouse
Université Bordeaux, France
Chongqing University, China

Altered plant architecture to inrease yield: increased node number on the main stem and branch number.
(Bao et al., 2019)

SDN1
CRISPR/Cas

Chinese Academy of Agricultural Sciences
Huazhong Agricultural University, China
Duy Tan University, Vietnam
RIKEN Center for Sustainable Resource Science, Japan

Regulated inflorescence and flower development. More flowers and more fruit produced upon vibration-assisted fertilization.
( Hu et al., 2022 )

SDN1
CRISPR/Cas

Université de Toulouse, France
Chongqing University, China

Traits related to industrial utilization

Enabled clonal reproduction trough seeds. Application of the method may enable self-propagation of a broad range of elite F1 hybrid crops.
( Wang et al., 2019 )

SDN1
CRISPR/Cas

Chinese Academy of Agricultural Sciences, China
Université Paris-Saclay, France

Accelerated domestication of African rice landraces by improving domestication traits such as sheed shattering, lodging and seed yield. The acceleration of the development of high-yield African landrace varieties is important considering that Africa has a strong growing population and prone to food shortage.
( Lacchini et al., 2020 )

SDN1
CRISPR/Cas

University of Milan, Italy
University of Montpellier, France

Asexual propagation trough seeds. Induction of apomeiosis, mitosis instead of meiosis. This proces leads to the production of genetically identical seeds, serving many applications in plant breeding.
( Khanday et al., 2019 )

SDN1
CRISPR/Cas

University of California
Innovative Genomics Institute
Iowa State University, USA
Université Paris-Saclay, France

Manipulation of self-incompatibility.
( Zhang et al., 2020 )

SDN1
CRISPR/Cas

Chinese Academy of Sciences, China
Aarhus University
DLF Seeds A/S, Denmark

Jointless tomatoes. Pedicel abscission is an important agronomic factor that controls yield and post-harvest fruit quality. In tomato, floral stems that remain attached to harvested fruits during picking mechanically damage the fruits during transportation, decreasing the fruit quality for fresh-market tomatoes and the pulp quality for processing tomatoes.
( Roldan et al., 2017 )

SDN1
CRISPR/Cas

Institute of Plant Sciences Paris-Saclay (IPS2), France
University of Liège, Belgium

Traits related to herbicide tolerance

Herbicide tolerance: AHAS-inhibiting
(Gocal et al., 2015)

ODM

Cibus, Canada
Cibus, USA

Chlorsulfuron
( Veillet et al., 2019 )

Université Rennes 1
INRA PACA
Université Paris-Saclay, France

Chlorsulfuron
( Veillet et al., 2019 )

Université Rennes 1
INRA PACA
Université Paris-Saclay, France

Herboxidiene
( Butt et al., 2019 )

SDN1
CRISPR/Cas

King Abdullah University of Science and Technology (KAUST), Saudi Arabia
Universite Paris-Saclay, France

Traits related to product color/flavour

Albino phenotype.
( Charrier et al., 2019 )

SDN1
CRISPR/Cas

Université d'
Angers, France

Albino phenotype and early flowering.
( Charrier et al., 2019 )

SDN1
CRISPR/Cas

Université d'
Angers, France

A significant reduction of saponins. Saponins are a source of bitter, and metallic off-flavors in products containing peas.
( Hodgins et al., 2024 )

SDN1
CRISPR/Cas

Universityof Calgary
Universityof Saskatchewan
National Research Council of Canada, Canada

Albino phenotype.
( Syombua et al., 2021 )

SDN1
CRISPR/Cas

International Institute of Tropical Agriculture (IITA)
University of Nairobi, Kenya
University of Missouri
Iowa State University
Donald Danforth Plant Science Center, USA

Improved aroma, flavour and fatty acid (FA) profiles of pea seeds.
( Bhowmik et al., 2023 )

SDN1
CRISPR/Cas

National Research Council Canada (NRC)
University of Calgary
University of Saskatchewan
Agriculture and Agri-Food Canada (AAFC)
St. Boniface Hospital Research, Canada
John Innes Centre, UK

Traits related to storage performance

Extended root shelf-life, which decreases its wastage.
( Mukami et al., 2023 )

SDN1
CRISPR/Cas

Kenyatta University
Jomo Kenyatta University of Agriculture Technology
Pwani University Kilifi, Kenya

Traits categories

Genome Editing Technique

Countries

Plant

Sdn Type

Traits related to biotic stress tolerance

Traits related to abiotic stress tolerance

Traits related to improved food/feed quality

Traits related to increased plant yield and growth

Traits related to industrial utilization

Traits related to herbicide tolerance

Traits related to product color/flavour

Traits related to storage performance