genome search | EU-SAGE

Genome-editing techniques are promising tools in plant breeding. To facilitate a more comprehensive understanding of the use of genome editing, EU-SAGE developed an interactive, publicly accessible online database of genome-edited crop plants as described in peer-reviewed scientific publications.
The aim of the database is to inform interested stakeholder communities in a transparent manner about the latest evidence about the use of genome editing in crop plants. Different elements including the plant species, traits, techniques, and applications can be filtered in this database.
Regarding the methodology, a literature search in the bibliographic databases and web pages of governmental agencies was conducted using predefined queries in English. Identifying research articles in other languages was not possible due to language barriers. Patents were not screened.
Peer-reviewed articles were screened for relevance and were included in the database based on pre-defined criteria. The main criterium is that the research article should describe a research study of any crop plant in which a trait has been introduced that is relevant from an agricultural and/or food/feed perspective. The database does neither give information on the stage of development of the crop plant, nor on the existence of the intention to develop the described crop plants to be marketed.
This database will be regularly updated. Please contact us via the following webpage in case you would like to inform us about a new scientific study of crops developed for market-oriented agricultural production as a result of genome editing

Displaying 51 results

Traits related to biotic stress tolerance

Highly significant reduction in susceptibility to fire blight, caused by the bacterium Erwinia amylovora. Apple is one of the most cultivated fruit crops throughout the temperate regions of the world.
( Pompili et al., 2020 )

SDN1
CRISPR/Cas

Università degli Studi di Udine
Fondazione Edmund Mach, Italy

Fungal resistance: Enhanced resistance to the pathogen Sclerotinia sclerotiorum.
(Sun et al., 2018)

SDN1
CRISPR/Cas

Yangzhou University, China

Viral resistance: increased resistance to infection with the potato virus Y (PVY) and tolerance to salt and osmotic stress. PVY is one of the most economically important potato pathogens
(Makhotenko et al., 2019)

SDN1
CRISPR/Cas

Russia Moscow State University, Russia
Doka Gene Technologies Ltd, USA

Bacterial resistance: Increased resistance to Erwinia amylovora, causing fire blight disease that threatens the apple and a wide range of ornamental and commercial Rosaceae host plants.
(Malnoy et al., 2016)

SDN1
CRISPR/Cas

Fondazione Edmund Mach, Italy
ToolGen Inc.
Institute for Basic Science
Seoul National University, South Korea

Fungal resistance: contribute to Sclerotinia sclerotiorum resistance.
(Zhang et al., 2022)

SDN1
CRISPR/Cas

Huazhong Agricultural University, China

Broad-spectrum resistance against multiple Potato virus Y (PVY)-strains.
( Noureen et al., 2022 )

SDN1
CRISPR/Cas

Constituent College of Pakistan Institute of Engineering and Applied Sciences (PIEAS)
University Institute of Biochemistry and Biotechnology (UIBB), Pakistan

Visual detection of maize chlorotic mottle virus (MCMV), one of the important quarantine pathogens in China. This novel method is specific, rapid, sensitive and does not require special instruments and technical expertise.
( Duan et al., 2022 )

SDN1
CRISPR/Cas

China Agricultural University
Yazhou Bay Science and Technology City, China
Alexandria University, Egypt

Oilseed rape mutant with non-abscising floral organs. Clerotinia stem rot (SSR), caused by Sclerotinia sclerotiorum is a detrimental fungal disease for oilseed rape. Petal infection is crucial to the prevalence of SSR in oilseed rape. Oilseed rape varieties with abscission-defective ﬂoral organs were predicted to be less susceptible to Sclerotinia infection and to have a longer ﬂowering period to enhance tourism income.
( Wu et al., 2022 )

SDN1
CRISPR/Cas

Yangzhou University, China

Confered resistance to ear rot caused by Fusarium verticillioides.
( Liu et al., 2022 )

SDN1
CRISPR/Cas

National Key Facility for Crop Gene Resources and Genetic Improvement
Hainan Yazhou Bay Seed Lab, China

Viral resistance: reduced viral accumulation and amelioration of virus-induced symptoms by Potato Virus Y.
(Lucioli et al., 2022)

SDN1
CRISPR/Cas

ENEA
Council for Agricultural Research and Economics (CREA), Italy
National Agricultural Research and Innovation Centre, Hungary

Fungal resistance: increased resistance to southern leaf blight (SLB), caused by the necrotrophic fungal pathogen Cochliobolus heterostrophus (anamorph Bipolaris maydis). SLB is a major foliar disease which causes significant yield losses in maize worldwide.
(Chen et al., 2023)

SDN1
CRISPR/Cas

Northwest A&
F University, China
Corteva AgriscienceTM
USDA-ARS
North Carolina State University, USA

Fungal resistance: decreased susceptibility to Ustilago maydis, causing smut. The pathogen causes galls on all aerial parts of the plant, impacting crop yield and quality.
(Pathi et al., 2020)

SDN1
CRISPR/Cas

Leibniz Institute of Plant Genetics and Crop Plant Research, Germany

Viral resistance: Resistance to Potato Virus Y (PVY), one of the most devastating viral pathogens causing substantial harvest losses.
(Zhan et al., 2019)

CRISPR/Cas

Hubei University
Huazhong Agricultural University, China
Max‐Planck‐Institut für Molekulare Pflanzenphysiologie, Germany

Fungal resistance: increased resistance to Phytophthora infestans, causing late blight disease, the most serious disease of potato crops worldwide. The pathogen can infect the leaves, stems and tubers of potato plants. An unprotected field can be completely destroyed in several days.
(Kieu et al., 2021)

SDN1
CRISPR/Cas

Swedish University of Agricultural Sciences, Sweden
University of Copenhagen, Denmark

Fungal resistance: reduced susceptibility to Verticillium longisporum, a pathogen causing Verticillium stem striping. No fungicide treatments are currently available to control this disease.
(Pröbsting et al., 2020)

SDN1
CRISPR/Cas

Christian-Albrechts-University of Kiel
Institut für Zuckerrübenforschung
NPZ Innovation GmbH, Germany

Visual detection of Alternaria solani, the causal agent of early blight in potato, which poses a persistant threat to potato production worldwide. The platform is specific, sensitive and suitable for high-throughput detection.
( Guo et al., 2023 )

SDN1
CRISPR/Cas

Jilin University
Jilin Agricultural University
Shenzhen Campus of Sun Yat-sen University, China

Visual detection of Fusarium temperatum, the causal agent of maize stalk rot disease which reduces grain yield and threatens food safety and quality.
This simple detection platform allows high-throughput testing with potential for applications in field detection.
( Li et al., 2023 )

SDN1
CRISPR/Cas

Jilin University
Jilin Agricultural University
Shenzhen Campus of Sun Yat-sen University, China

Detection of Fumonisin B1 (FB1), a common mycotoxin found in agricultural products. FB1 is highly toxic, which can cause oxidative stress response and has been listed as a class 2B carcinogen. The method wx is highly specific and sensitive for FB1, has a rather simple, convenient and fast workflow.
( Qiao et al., 2023 )

SDN1
CRISPR/Cas

Kunming University of Science and Technology, China

Viral resistance: Resistance against potato leaf roll virus, potato virus Y, potato virus X and potato virus S, which have been recognized as the major potato viruses.
(Zhan et al., 2023)

SDN1
CRISPR/Cas

Hubei University
Huazhong Agricultural University
Chinese Academy of Agricultural Sciences, China

Visual detection of brassica yellows virus (BrYV), an economically important virus on cruciferous species. This assay allows for convenient, portable, rapid, low-cost, highly sensitive and specific detection and has great potential for on-site monitoring of BrYV.
( Xu et al., 2023 )

SDN1
CRISPR/Cas

Guizhou University, China

Fungal resistance: Improved resistance against Phytophtora without affecting potato growth and development.
(Bi et al., 2023)

SDN1
CRISPR/Cas

China Agricultural University
South China Agricultural University
Shanghai Normal University
Nanjing Agricultural University, China

Rapid detection of toxigenic Fusarium verticillioides, a phytopathogenic fungus that causes Fusarium ear and stalk rot and poses a threat to maize yields. This accurate and portable detection equipment has great potential for detection of the pathogen, even in areas lacking proper lab equipment.
( Liang et al., 2023 )

SDN1
CRISPR/Cas

Institute of Food Science and Technology
North Minzu University
School of Food Science and Engineering, China
Gembloux Agro-Bio Tech, Belgium

Resistance against a protist pathogen: stable resistance against clubroot disease. Clubroot disease is caused by the protist Plasmodiophora brassicae Woronin and can result in a 10-15% yield loss in Brassica species as well as related crops.
(Hu et al., 2023)

SDN1
CRISPR/Cas

Saskatoon Research and Development Centre, Canada

Viral resistance: Increased resistance to a potyvirus sugarcane mosaic virus, which causes dwarf mosaic disease in maize, sugarcane and sorghum.
(Xie et al., 2024)

SDN1
CRISPR/Cas

China Agricultural University
Longping Agriculture Science Co. Ltd.
Chinese Academy of Sciences
Yunnan Agricultural University, China

Fungal resistance: Reduced susceptibility to Verticillium longisporum, fungal pathogen that causes stem striping in Brassica napus and leads to huge yield losses.
(Ye et al., 2024)

SDN1
CRISPR/Cas

Christian-Albrechts-University of Kiel
Institut für Zuckerrübenforschung
Hohenlieth-Hof, NPZ Innovation GmbH, Germany
Aswan University, Egypt
Fujian Agriculture and Forestry University, China

Fungal and bacterial resistance: Increased resistance to late blight pathogen Phytophthora infestans, common scab, and the early blight pathogen Alternaria solani.
(Karlsson et al., 2024)

SDN1
CRISPR/Cas

University of Agricultural Sciences, Sweden

Bacterial resistance: Enhanced resistance against Candidatus Liberibacter spp., which causes significant economic losses globally.
(Ramasamy et al., 2024)

SDN1
CRISPR/Cas

Texas A&
M AgriLife Research and Extension Center
Texas A&
M University
Texas A&
M AgriLife, USA

Traits related to increased plant yield and growth

Increased shatter resistance to avoid seed loss during mechanical harvest.
( Braatz et al., 2017 )

SDN1
CRISPR/Cas

Christian-Albrechts-University of Kiel, Germany

Increased seeds number per husk, higher seed weight.
( Yang et al., 2018 )

SDN1
CRISPR/Cas

Huazhong Agricultural University, China

Confer shoot architectural changes for increased resource inputs to increase crop yield.
( Stanic et al., 2021 )

SDN1
CRISPR/Cas

University of Calgary, Canada
SRM Institute of Technology, India

Improve plant architecture to increase yield. Plant height and branch number are directly correlated with yield.
( Zheng et al., 2020 )

SDN1
CRISPR/Cas

Ministry of Agriculture, China
Wilkes University, USA

Semi-dwarf phenotype and compact architecture to increase yield. Plant height and branch angle are the major architectural factors determining yield.
( Fan et al., 2021 )

SDN1
CRISPR/Cas

Ministry of Agriculture and Rural Affairs, China
Wilkes University, USA

Increased grain yield under field drought stress conditions and no yield loss under well-watered conditions.
( Shi et al., 2017 )

SDN1
CRISPR/Cas

DuPont Pioneer, USA

Early flowering under long day conditions of higher latitudes to spread production of maize over a broad range of latitudes rapidly.
( Huang et al., 2018 )

SDN1
CRISPR/Cas

University of Wisconsin, USA

Haploid induction to accelerate breeding in crop plants.
( Kelliher et al., 2017 )

SDN1
TALENs

Syngenta Seeds, USA

Enhancing grain-yield-related traits by increases in meristem size
( Liu et al., 2021 )

SDN1
CRISPR/Cas

Cold Spring Harbor
University of Massachusetts Amherst, USA

Improved field performance: higher yield, producing on average 5.5 bushels per acre more. Waxy corn.
(Gao et al., 2020)

SDN1
CRISPR/Cas

Corteva Agriscience, USA

Increased plant yield due to architectural changes. Leaf inclination: maize plants with upright leaves can be planted at higher densities without shading.
(Brekke et al., 2011)

SDN1
CRISPR/Cas

Iowa State University, USA

Increased bending strength. Stalk lodging, which is generally determined by stalk strength, results in considerable yield loss and has become a primary threat to maize yield under high-density planting.
( Zhang et al., 2020 )

SDN1
CRISPR/Cas

China Agricultural University, China
Iowa State University, USA

Increased density by early-flowering phenotype under long-day conditions.
( Li et al., 2020 )

SDN1
CRISPR/Cas

Shandong Agricultural University
South China Agricultural University
Chinese Academy of Agricultural Sciences
Guangdong Laboratory for Lingnan Modern Agriculture, China

Semi-dwarf phenotype with increased lodging resistance.
( Zhang et al., 2020 )

SDN1
CRISPR/Cas

Chinese Academy of Agricultural Sciences, China

Early-flowering varieties. The timing of flowering is an important event in the life cycle of flowering plants.
( Jiang et al., 2018 )

SDN1
CRISPR/Cas

Hunan Agricultural University, China
Université de Strasbourg, France

Rapid improvement of domestication traits and genes that control plant architecture, flower production and fruit size. Major productivity traits are improved in an orphan crop.
( Lemmon et al., 2018 )

SDN1
CRISPR/Cas

Cold Spring Harbor
The Boyce Thompson Institute
Cornell University, USA

Increased tassel branch number (TBN), one of the important agronomic traits that contribute to the efficiency of seed production.
( Guan et al., 2022 )

SDN1
CRISPR/Cas

Chinese Academy of Agricultural Sciences, China

Increased seed oil content (SOC). SOC is a major determinant of yield and quality.
( Karunarathna et al., 2020 )

SDN1
CRISPR/Cas

Christian-Albrechts-University of Kiel, Germany
Zhejiang University, China

Increased water use efficiency, a promising approach for achieving sustainable crop production in changing climate scenarios.
( Blankenagel et al., 2022 )

SDN1
CRISPR/Cas

Technical University of Munich
Max Planck Institute of Molecular Plant Physiology
Helmholtz Center Munich
Heinrich Heine University Düsseldorf, Germany

Improves complex traits such as yield and drought tolerance.
( Lorenzo et al., 2022 )

SDN1
CRISPR/Cas

Center for Plant Systems Biology
Ghent University
Flanders Research Institute for Agriculture Fisheries and Food (ILVO), Belgium

Increased total kernel number or kernel weight.
( Kelliher et al., 2019 )

SDN1
CRISPR/Cas

Research Triangle Park
University of Georgia, USA
Syngenta Crop Protection, The Netherlands

Increases size of starch granules. Granule size is a key parameter for industrial processing. Larger granules may increase yield during processing and it has been shown in sweet potato that smaller starch granules degrade faster than large granules, so larger granule tubers may be beneficial for storage.
( Pfotenhauer et al., 2023 )

SDN1
CRISPR/Cas

University of Tennessee, USA

Enlarged grain phenotype.
( Wang et al., 2023 )

SDN1
CRISPR/Cas

Hebi Academy of Agricultural Sciences
Henan Agricultural University, China

Increased plant height, longer roots, smaller root growth angle and increased tuber weight.
( Zhao et al., 2024 )

SDN1
CRISPR/Cas

Yunnan Agricultural University
Chinese Academy of Sciences
Xuanhan County Plant Quarantine Station
Yuguopu District Agricultural Comprehensive Service Center
Ning'
er County Plant Protection and Plant Quarantine Station, China

Traits categories

Genome Editing Technique

Countries

Plant

Sdn Type

Traits related to biotic stress tolerance

Traits related to increased plant yield and growth